Colquitt Lab at UCSC

Testbed

Basic formatting

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TABLE Game 1 Game 2 Game 3 Total
Anna 144 123 218 485
Bill 90 175 120 385
Cara 102 214 233 549

It was the best of times it was the worst of times. It was the age of wisdom, it was the age of foolishness. It was the spring of hope, it was the winter of despair.

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popup.innerText =
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This sentence has inline code, useful for making references to variables, packages, versions, etc. within a sentence.

Lorem ipsum dolor sit amet.

Consectetur adipiscing elit.

Sed do eiusmod tempor incididunt.

Hidden content

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Jekyll Spaceship

Stage Direct Products ATP Yields
Glycolysis
2 ATP  
2 NADH 3–5 ATP
Pyruvaye oxidation 2 NADH 5 ATP
Citric acid cycle

2 ATP  
6 NADH 15 ATP
2 FADH 3 ATP
30–32 ATP    

$ a * b = c ^ b $

$ 2^{\frac{n-1}{3}} $

$ \int_a^b f(x)\,dx. $

Components

Section

Section, background

Section, dark=true

Section, background dark=true

Section, size=wide

Section, size=full w/ figure

figure image

Figure

figure image
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Button

Icon

Lorem Ipsum Dolor

Feature

Title

Title

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Title

Title

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List

List citations

2023

Neural circuit-wide analysis of changes to gene expression during deafening-induced birdsong destabilization
Bradley M Colquitt, Kelly Li, Foad Green, Robert Veline, Michael S Brainard
eLife  ·  07 Jun 2023  ·  doi:10.7554/eLife.85970

2022

Organizational Conservation and Flexibility in the Evolution of Birdsong and Avian Motor Control
Bradley M. Colquitt
Brain, Behavior and Evolution  ·  01 Jan 2022  ·  doi:10.1159/000525019

2021

Cellular transcriptomics reveals evolutionary identities of songbird vocal circuits
Bradley M. Colquitt, Devin P. Merullo, Genevieve Konopka, Todd F. Roberts, Michael S. Brainard
Science  ·  12 Feb 2021  ·  doi:10.1126/science.abd9704

2018

Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning
Bradley M Colquitt, David G Mets, Michael S Brainard
GigaScience  ·  15 Feb 2018  ·  doi:10.1093/gigascience/giy008

2014

Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
Eirene Markenscoff-Papadimitriou, William E. Allen, Bradley M. Colquitt, Tracie Goh, Karl K. Murphy, Kevin Monahan, Colleen P. Mosley, Nadav Ahituv, Stavros Lomvardas
Cell  ·  01 Oct 2014  ·  doi:10.1016/j.cell.2014.09.033
Dnmt3a Regulates Global Gene Expression in Olfactory Sensory Neurons and Enables Odorant-Induced Transcription
Bradley M. Colquitt, Eirene Markenscoff-Papadimitriou, Rachel Duffié, Stavros Lomvardas
Neuron  ·  01 Aug 2014  ·  doi:10.1016/j.neuron.2014.07.013

2013

Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity
Bradley M. Colquitt, William E. Allen, Gilad Barnea, Stavros Lomvardas
Proceedings of the National Academy of Sciences  ·  22 Aug 2013  ·  doi:10.1073/pnas.1302759110

2011

An Epigenetic Signature for Monoallelic Olfactory Receptor Expression
Angeliki Magklara, Angela Yen, Bradley M. Colquitt, E. Josephine Clowney, William Allen, …, George Mountoufaris, Catriona Carey, Gilad Barnea, Manolis Kellis, Stavros Lomvardas
Cell  ·  01 May 2011  ·  doi:10.1016/j.cell.2011.03.040

List projects

Cool Dataset
Cool Dataset a subtitle

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Cool Package
Cool Package a subtitle

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Cool Tutorial
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Cool Web App
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Cool Web Server
Cool Web Server a subtitle

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List team members


List blog posts

2023

Example post 3
Example post 3

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2021

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2019

Example post 1

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Citation

[no title info]
[no publisher info]  ·  [no date info]  ·  [no id info]
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Manual title
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[no publisher info]  ·  [no date info]  ·  [no id info]

Card

A Large Card
A Large Card A cool card

A cool description

A Small Card
A Small Card A cool card

Lorem ipsum

Portrait

Post Excerpt

Example post 1

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Manual title

Alert

Tip Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Help Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Info Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Success Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Warning Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Error Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Tags

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Caption
Caption

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Code

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Grid

Regular

With Markdown images

image

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Square

With figure components

Grid of citations

2023

Neural circuit-wide analysis of changes to gene expression during deafening-induced birdsong destabilization
Neural circuit-wide analysis of changes to gene expression during deafening-induced birdsong destabilization
Bradley M Colquitt, Kelly Li, Foad Green, Robert Veline, Michael S Brainard
eLife  ·  07 Jun 2023  ·  doi:10.7554/eLife.85970

2022

Organizational Conservation and Flexibility in the Evolution of Birdsong and Avian Motor Control
Organizational Conservation and Flexibility in the Evolution of Birdsong and Avian Motor Control
Bradley M. Colquitt
Brain, Behavior and Evolution  ·  01 Jan 2022  ·  doi:10.1159/000525019

2021

Cellular transcriptomics reveals evolutionary identities of songbird vocal circuits
Cellular transcriptomics reveals evolutionary identities of songbird vocal circuits
Bradley M. Colquitt, Devin P. Merullo, Genevieve Konopka, Todd F. Roberts, Michael S. Brainard
Science  ·  12 Feb 2021  ·  doi:10.1126/science.abd9704

2018

Draft genome assembly of the Bengalese finch, i Lonchura striata domestica i , a model for motor skill variability and learning
Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning
Bradley M Colquitt, David G Mets, Michael S Brainard
GigaScience  ·  15 Feb 2018  ·  doi:10.1093/gigascience/giy008

2014

Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
Enhancer Interaction Networks as a Means for Singular Olfactory Receptor Expression
Eirene Markenscoff-Papadimitriou, William E. Allen, Bradley M. Colquitt, Tracie Goh, Karl K. Murphy, Kevin Monahan, Colleen P. Mosley, Nadav Ahituv, Stavros Lomvardas
Cell  ·  01 Oct 2014  ·  doi:10.1016/j.cell.2014.09.033
Dnmt3a Regulates Global Gene Expression in Olfactory Sensory Neurons and Enables Odorant-Induced Transcription
Dnmt3a Regulates Global Gene Expression in Olfactory Sensory Neurons and Enables Odorant-Induced Transcription
Bradley M. Colquitt, Eirene Markenscoff-Papadimitriou, Rachel Duffié, Stavros Lomvardas
Neuron  ·  01 Aug 2014  ·  doi:10.1016/j.neuron.2014.07.013

2013

Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity
Alteration of genic 5-hydroxymethylcytosine patterning in olfactory neurons correlates with changes in gene expression and cell identity
Bradley M. Colquitt, William E. Allen, Gilad Barnea, Stavros Lomvardas
Proceedings of the National Academy of Sciences  ·  22 Aug 2013  ·  doi:10.1073/pnas.1302759110

2011

An Epigenetic Signature for Monoallelic Olfactory Receptor Expression
An Epigenetic Signature for Monoallelic Olfactory Receptor Expression
Angeliki Magklara, Angela Yen, Bradley M. Colquitt, E. Josephine Clowney, William Allen, …, George Mountoufaris, Catriona Carey, Gilad Barnea, Manolis Kellis, Stavros Lomvardas
Cell  ·  01 May 2011  ·  doi:10.1016/j.cell.2011.03.040

Grid of blog posts

2023

Example post 3
Example post 3

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2021

Example post 2

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2019

Example post 1

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Cols

Text

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua.

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a.

Lorem ipsum dolor sit amet, consectetur adipiscing elit, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Nulla facilisi etiam dignissim diam quis. Id aliquet lectus proin nibh nisl condimentum id venenatis a. Tristique magna sit amet purus gravida quis blandit turpis cursus. Ultrices eros in cursus turpis massa tincidunt dui ut ornare. A cras semper auctor neque vitae tempus quam pellentesque nec. At tellus at urna condimentum mattis pellentesque. Ipsum consequat nisl vel pretium. Ultrices mi tempus imperdiet nulla malesuada pellentesque elit eget gravida. Integer vitae justo eget magna fermentum iaculis eu non diam. Mus mauris vitae ultricies leo integer malesuada nunc vel. Leo integer malesuada nunc vel risus. Ornare arcu odio ut sem nulla pharetra. Purus semper eget duis at tellus at urna condimentum. Enim neque volutpat ac tincidunt vitae semper quis lectus.

Images

Fig. 1a
Fig. 1a

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Fig. 1b
Fig. 1b

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Fig. 1c
Fig. 1c

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Code

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const test = "Lorem ipsum dolor sit amet";
const test = "Lorem ipsum dolor sit amet";